STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3931Conserved hypothetical protein; Identified by similarity to OMNI:PSPTO1001. (714 aa)    
Predicted Functional Partners:
CPS_3932
Identified by similarity to GP:28738; match to protein family HMM PF00245; Belongs to the alkaline phosphatase family.
  
  
 0.565
CPS_3933
Identified by similarity to GP:28738; match to protein family HMM PF00245; Belongs to the alkaline phosphatase family.
  
  
 0.544
CPS_2634
This is a extracellular ribonuclease/nuclease fusion protein; identified by similarity to PIR:T31332; match to protein family HMM PF03372; match to protein family HMM PF04231.
 
  
 0.474
CPS_0124
Putative flagellar protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.468
CPS_2256
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
   
 0.450
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.