STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3971TPR domain protein. (454 aa)    
Predicted Functional Partners:
CPS_3972
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.909
exbD3
Biopolymer transport exbD protein; Identified by similarity to SP:Q9ZHV9; match to protein family HMM PF02472.
 
 
   0.883
CPS_3975
MotA/TolQ/ExbB proton channel family protein; Identified by match to protein family HMM PF01618.
 
     0.864
CPS_3976
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:27360409.
 
 
 0.864
exbB3
Biopolymer transport exbB protein; Identified by match to protein family HMM PF01618.
 
     0.859
CPS_3756
Conserved hypothetical protein; Identified by similarity to OMNI:SO1824.
 
 
 0.816
CPS_3752
Putative TonB protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
   0.794
CPS_4762
TonB domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
   0.782
CPS_3755
MotA/TolQ/ExbB proton channel family; Identified by match to protein family HMM PF01618.
 
     0.780
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 0.775
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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