STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3987Identified by match to protein family HMM PF00149. (462 aa)    
Predicted Functional Partners:
ribF
Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family.
    
 0.905
CPS_0178
Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF00175.
     
  0.904
CPS_0079
HAD-superfamily hydrolase, subfamily IA, variant 1 family protein; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01549.
    
  0.901
ribE1
Riboflavin synthase, alpha subunit; Identified by match to protein family HMM PF00677; match to protein family HMM TIGR00187.
     
  0.900
CPS_4230
Hypothetical protein; Identified by Glimmer2; putative.
   
 
 0.703
CPS_0549
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.656
CPS_3988
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01782.
 
     0.624
CPS_0688
Thiamine pyrophosphate-binding domain protein; Identified by similarity to SP:P23234; match to protein family HMM PF02776; Belongs to the TPP enzyme family.
  
     0.530
CPS_1688
Aha1 domain protein.
  
     0.459
CPS_4627
Serine protease, trypsin family; Identified by match to protein family HMM PF00089; match to protein family HMM PF02225.
  
  
 0.457
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.