STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_3998Site-specific recombinase, phage integrase family, truncated. (74 aa)    
Predicted Functional Partners:
CPS_3999
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CPS_0900
Site-specific recombinase, phage integrase family; Identified by match to protein family HMM PF00589.
  
   
 0.753
CPS_4000
Hypothetical protein; Identified by Glimmer2; putative.
       0.618
CPS_2759
Cell division protein FtsK; Identified by similarity to SP:P46889; match to protein family HMM PF01580.
 
   
 0.533
CPS_3997
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to GP:27358518.
       0.441
CPS_0218
Competence protein, homolog; Identified by similarity to SP:P31773.
   
    0.412
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
   
 0.411
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.