STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4021Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF01965. (353 aa)    
Predicted Functional Partners:
soxD1
Sarcosine oxidase, delta subunit; Identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374.
 
    0.674
soxD2
Sarcosine oxidase, delta subunit; Identified by similarity to SP:Q46336; match to protein family HMM PF04267; match to protein family HMM TIGR01374.
 
    0.674
CPS_4017
Oxidoreductase, FAD/FMN-binding; Identified by match to protein family HMM PF00724; match to protein family HMM PF07992.
 
    0.673
soxA1
Sarcosine oxidase, alpha subunit; Identified by similarity to SP:Q46337; match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372; Belongs to the GcvT family.
 
     0.668
soxA2
Sarcosine oxidase, alpha subunit; Identified by match to protein family HMM PF01571; match to protein family HMM PF07992; match to protein family HMM TIGR01372.
 
     0.668
soxG1
Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268.
 
    0.659
soxG2
Sarcosine oxidase, gamma subunit; Identified by similarity to SP:Q46338; match to protein family HMM PF04268.
 
    0.659
CPS_4018
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA05398.
 
    0.629
CPS_3711
Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM PF02311.
  
   0.558
CPS_2483
Identified by match to protein family HMM PF01381; match to protein family HMM PF07883.
  
  
 0.545
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.