fbiD protein (Colwellia psychrerythraea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fbiD

Conserved hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor. (210 aa)

Predicted Functional Partners:

cofD

0.995

CPS_4045

0.985

CPS_4048

0.953

CPS_4049

0.953

CPS_4044

0.952

mer

0.933

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPS_4044	CPS_4045	CPS_4044	CPS_4045	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	0.953
CPS_4044	CPS_4048	CPS_4044	CPS_4048	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	0.947
CPS_4044	CPS_4049	CPS_4044	CPS_4049	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.947
CPS_4044	cofD	CPS_4044	CPS_4047	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	LPPG:Fo 2-phospho-L-lactate transferase; Identified by similarity to OMNI:MJ1256.	0.952
CPS_4044	fbiD	CPS_4044	CPS_4046	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	Conserved hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.	0.952
CPS_4044	mer	CPS_4044	CPS_4043	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	Methylenetetrahydromethanopterin reductase; Identified by similarity to GP:927438; match to protein family HMM PF00296.	0.923
CPS_4045	CPS_4044	CPS_4045	CPS_4044	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	0.953
CPS_4045	CPS_4048	CPS_4045	CPS_4048	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	0.954
CPS_4045	CPS_4049	CPS_4045	CPS_4049	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.953
CPS_4045	cofD	CPS_4045	CPS_4047	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	LPPG:Fo 2-phospho-L-lactate transferase; Identified by similarity to OMNI:MJ1256.	0.996
CPS_4045	fbiD	CPS_4045	CPS_4046	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	Conserved hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.	0.985
CPS_4045	mer	CPS_4045	CPS_4043	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	Methylenetetrahydromethanopterin reductase; Identified by similarity to GP:927438; match to protein family HMM PF00296.	0.932
CPS_4048	CPS_4044	CPS_4048	CPS_4044	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	0.947
CPS_4048	CPS_4045	CPS_4048	CPS_4045	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	0.954
CPS_4048	CPS_4049	CPS_4048	CPS_4049	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	0.998
CPS_4048	cofD	CPS_4048	CPS_4047	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	LPPG:Fo 2-phospho-L-lactate transferase; Identified by similarity to OMNI:MJ1256.	0.995
CPS_4048	fbiD	CPS_4048	CPS_4046	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	Conserved hypothetical protein; Guanylyltransferase that catalyzes the activation of phosphoenolpyruvate (PEP) as enolpyruvoyl-2-diphospho-5'-guanosine, via the condensation of PEP with GTP. It is involved in the biosynthesis of coenzyme F420, a hydride carrier cofactor.	0.953
CPS_4048	mer	CPS_4048	CPS_4043	Conserved hypothetical protein TIGR00423; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR00423.	Methylenetetrahydromethanopterin reductase; Identified by similarity to GP:927438; match to protein family HMM PF00296.	0.920
CPS_4049	CPS_4044	CPS_4049	CPS_4044	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	NADPH-dependent F420 reductase; Identified by match to protein family HMM PF03807; match to protein family HMM TIGR01915.	0.947
CPS_4049	CPS_4045	CPS_4049	CPS_4045	Radical SAM domain protein; Identified by match to protein family HMM PF04055.	Putative F420-dependent oxidoreductase; Identified by match to protein family HMM PF01996; match to protein family HMM TIGR01916.	0.953

page 1 of 3

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Databases

Fusion

Textmining

Cooccurrence

Experiments

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About