Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4100Hypothetical protein; Identified by Glimmer2; putative. (599 aa)    
Predicted Functional Partners:
CPS_4101
Putative membrane protein.
     0.960
CPS_0066
Conserved hypothetical protein; Identified by similarity to OMNI:SO2714.
  
     0.651
CPS_0396
Putative membrane protein.
  
     0.637
CPS_2566
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.631
CPS_3759
Conserved hypothetical protein; Identified by similarity to OMNI:SO1814.
  
     0.627
CPS_0684
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.626
CPS_4757
Conserved hypothetical protein; Identified by similarity to OMNI:SO3905.
  
     0.572
CPS_4102
Conserved hypothetical protein; Identified by similarity to GP:28805487; match to protein family HMM PF03883; Belongs to the UPF0246 family.
       0.559
CPS_1205
Sensor histidine kinase; Identified by match to protein family HMM PF00672; match to protein family HMM PF02518.
  
     0.547
CPS_4294
Putative chemotaxis protein; Identified by similarity to SP:P40403.
  
     0.529
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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