STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4101Putative membrane protein. (177 aa)    
Predicted Functional Partners:
CPS_4100
Hypothetical protein; Identified by Glimmer2; putative.
     0.953
CPS_0684
Putative TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.650
CPS_4102
Conserved hypothetical protein; Identified by similarity to GP:28805487; match to protein family HMM PF03883; Belongs to the UPF0246 family.
       0.559
aqpZ
Aquaporin Z; Channel that permits osmotically driven movement of water in both directions. It is involved in the osmoregulation and in the maintenance of cell turgor during volume expansion in rapidly growing cells. It mediates rapid entry or exit of water in response to abrupt changes in osmolarity; Belongs to the MIP/aquaporin (TC 1.A.8) family.
       0.517
CPS_4103
Hypothetical protein; Identified by Glimmer2; putative.
       0.437
CPS_1206
Putative outer membrane porin; Identified by match to protein family HMM PF00267.
  
     0.426
CPS_0704
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00357.
  
    0.423
CPS_2484
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
     0.410
CPS_0066
Conserved hypothetical protein; Identified by similarity to OMNI:SO2714.
  
     0.409
CPS_3229
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.402
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.