STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4102Conserved hypothetical protein; Identified by similarity to GP:28805487; match to protein family HMM PF03883; Belongs to the UPF0246 family. (257 aa)    
Predicted Functional Partners:
CPS_0940
Major facilitator family transporter; Identified by match to protein family HMM PF07690.
  
    0.754
CPS_3601
Putative membrane protein; Identified by match to protein family HMM PF07690.
  
    0.687
CPS_4103
Hypothetical protein; Identified by Glimmer2; putative.
       0.590
CPS_4100
Hypothetical protein; Identified by Glimmer2; putative.
       0.559
CPS_4101
Putative membrane protein.
       0.559
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
       0.468
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.