STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4174Conserved hypothetical protein. (413 aa)    
Predicted Functional Partners:
CPS_4175
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
       0.785
parE
DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
     
 0.588
tolC
Outer membrane protein TolC; Identified by similarity to GP:17384364; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 
 0.545
CPS_5034
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01ATA0312.
  
     0.514
CPS_2077
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.511
CPS_2386
Efflux transporter, RND family, outer membrane lipoprotein subunit; Identified by similarity to SP:P77211; match to protein family HMM PF02321.
  
 
 0.465
CPS_3031
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.465
CPS_4646
RND efflux system, outer membrane lipoprotein, NodT family; Identified by similarity to SP:P77211; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
 
 0.465
CPS_1839
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
 
 0.461
CPS_1957
Putative RND efflux system protein; Identified by similarity to SP:P13509; match to protein family HMM PF02321.
  
 
 0.452
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.