STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4197Conserved hypothetical protein; Identified by similarity to GP:27360197. (201 aa)    
Predicted Functional Partners:
CPS_4179
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03ST2966.
  
    0.544
hemX
Putative uroporphyrin-III C-methyltransferase; Identified by similarity to SP:P09127; match to protein family HMM PF04375.
  
     0.513
CPS_2586
Identified by match to protein family HMM PF07681.
  
     0.506
tmcA
Conserved hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
  
     0.498
CPS_2293
Conserved hypothetical protein; Identified by similarity to GP:28807052; match to protein family HMM PF02620.
 
     0.490
CPS_4195
LysM domain /ErfK/YbiS/YcfS/YnhG domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF03734.
     
 0.484
CPS_4432
Conserved hypothetical protein; Identified by similarity to OMNI:VC0581.
  
     0.473
CPS_4196
Putative adenylate cyclase; Identified by match to protein family HMM PF01928.
       0.468
mltF
Transglycosylase, SLT family; Murein-degrading enzyme that degrades murein glycan strands and insoluble, high-molecular weight murein sacculi, with the concomitant formation of a 1,6-anhydromuramoyl product. Lytic transglycosylases (LTs) play an integral role in the metabolism of the peptidoglycan (PG) sacculus. Their lytic action creates space within the PG sacculus to allow for its expansion as well as for the insertion of various structures such as secretion systems and flagella. In the N-terminal section; belongs to the bacterial solute- binding protein 3 family.
  
     0.452
CPS_0153
Conserved hypothetical protein; Identified by similarity to SP:P32680.
  
     0.437
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.