STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4204Hypothetical protein; Identified by Glimmer2; putative. (448 aa)    
Predicted Functional Partners:
tagD
Glycerol-3-phosphate cytidyltransferase; Identified by similarity to SP:P27623; match to protein family HMM PF01467; match to protein family HMM TIGR00125.
     
 0.682
CPS_4206
Identified by match to protein family HMM PF04464.
  
    0.625
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.542
CPS_4990
Putative membrane protein; Identified by similarity to OMNI:NTL01NS0496; match to protein family HMM TIGR02602.
    
 
 0.505
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.443
CPS_1916
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
     
 0.438
CPS_0661
Identified by match to protein family HMM PF00501.
    
 0.423
fadD1
long-chain-fatty-acid--CoA ligase; Identified by similarity to SP:P29212; match to protein family HMM PF00501.
    
 0.423
CPS_2155
Identified by match to protein family HMM PF00501.
    
 0.423
CPS_3345
acid-CoA ligase family protein; Identified by similarity to GP:11595497; match to protein family HMM PF00501.
    
 0.423
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.