STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4212Putative general secretion pathway protein A; Identified by similarity to SP:P45754. (563 aa)    
Predicted Functional Partners:
CPS_4990
Putative membrane protein; Identified by similarity to OMNI:NTL01NS0496; match to protein family HMM TIGR02602.
 
    0.661
CPS_5025
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:P76388; match to protein family HMM PF02563.
 
     0.594
CPS_5026
Chain length determinant family protein; Identified by match to protein family HMM PF02706.
 
     0.569
CPS_4213
Putative ferric aerobactin receptor; Identified by similarity to SP:P14542; match to protein family HMM PF00593; match to protein family HMM PF07715.
  
    0.519
CPS_0781
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07720.
 
     0.505
CPS_0309
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
     0.483
CPS_5031
Sensor histidine kinase; Identified by similarity to SP:Q06067; match to protein family HMM PF02518.
  
     0.445
CPS_5027
Putative exopolysaccharide biosynthesis protein; Identified by similarity to SP:P39851.
 
     0.435
CPS_0310
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
     0.434
cca
tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.
       0.401
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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