STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirCC-type cytochrome c55x; Identified by similarity to SP:Q51479. (123 aa)    
Predicted Functional Partners:
CPS_4223
nirF protein; Identified by similarity to SP:Q51480; match to protein family HMM PF02239.
 
 
 0.981
CPS_4225
Putative heme biosynthesis protein; Identified by similarity to SP:Q52522.
 
  
 0.970
CPS_4224
Putative heme biosynthesis protein; Identified by similarity to OMNI:NTL03PA00515.
 
    0.962
CPS_4226
Putative heme biosythesis protein; Identified by similarity to SP:Q52525.
 
  
 0.961
norB
Nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.920
CPS_4227
Putative heme biosynthesis protein; Identified by similarity to OMNI:NTL03PA00512; match to protein family HMM PF04055.
 
  
 0.900
nirN
Heme-binding protein NirN; Identified by similarity to OMNI:NTL03PA00510; match to protein family HMM PF00034; match to protein family HMM PF02239.
 
 
0.889
nirS
Nitrite reductase; Identified by similarity to SP:P24040; match to protein family HMM PF00034; match to protein family HMM PF02239.
 
  
 0.872
petA
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.820
petB
Ubiquinol-cytochrome c reductase, cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.804
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.