STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4254lysM domain protein; Identified by similarity to GP:1162960; match to protein family HMM PF00515; match to protein family HMM PF01476; match to protein family HMM TIGR02521. (524 aa)    
Predicted Functional Partners:
CPS_4253
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
    0.813
pilN
Type IV pilus biogenesis protein PilN; Identified by similarity to OMNI:NTL03PA05044; match to protein family HMM PF05137.
  
   
 0.788
pilP
Type IV pilus biogenesis protein PilP; Identified by similarity to OMNI:NTL03PA05042; match to protein family HMM PF04351.
  
   
 0.787
pilO
Type IV pilus biogenesis protein PilO; Identified by similarity to OMNI:NTL03PA05043; match to protein family HMM PF04350.
  
   
 0.767
CPS_0471
Type IV pilus biogenesis protein PilQ; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
  
   
 0.766
pilM
Type IV pilus biogenesis protein PilM; Identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175.
  
   
 0.745
CPS_0021
LysM domain protein; Identified by similarity to OMNI:SO0033; match to protein family HMM PF01476.
  
     0.736
CPS_2304
Putative type IV pilus biogenesis protein pilZ; Identified by similarity to OMNI:NTL03PA02960; match to protein family HMM PF07238.
  
   
 0.699
CPS_0399
Conserved hypothetical protein; Identified by similarity to GP:6174690.
  
     0.659
rlmN
Radical SAM enzyme, Cfr family; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family.
  
    0.631
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.