Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CPS_4258 | CPS_4259 | CPS_4258 | CPS_4259 | Putative membrane protein. | Identified by match to protein family HMM PF00501. | 0.726 |
| CPS_4259 | CPS_4258 | CPS_4259 | CPS_4258 | Identified by match to protein family HMM PF00501. | Putative membrane protein. | 0.726 |
| CPS_4259 | pfaA | CPS_4259 | CPS_3104 | Identified by match to protein family HMM PF00501. | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | 0.822 |
| CPS_4259 | rplB | CPS_4259 | CPS_0870 | Identified by match to protein family HMM PF00501. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.626 |
| CPS_4259 | rplC | CPS_4259 | CPS_0873 | Identified by match to protein family HMM PF00501. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.668 |
| CPS_4259 | rplF | CPS_4259 | CPS_0616 | Identified by match to protein family HMM PF00501. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.637 |
| CPS_4259 | rplM | CPS_4259 | CPS_4443 | Identified by match to protein family HMM PF00501. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.664 |
| CPS_4259 | rplO | CPS_4259 | CPS_0620 | Identified by match to protein family HMM PF00501. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.656 |
| CPS_4259 | rplQ | CPS_4259 | CPS_0627 | Identified by match to protein family HMM PF00501. | Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.611 |
| CPS_4259 | rplX | CPS_4259 | CPS_0612 | Identified by match to protein family HMM PF00501. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.655 |
| CPS_4259 | rpsQ | CPS_4259 | CPS_0864 | Identified by match to protein family HMM PF00501. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.649 |
| pfaA | CPS_4259 | CPS_3104 | CPS_4259 | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | Identified by match to protein family HMM PF00501. | 0.822 |
| pfaA | rplB | CPS_3104 | CPS_0870 | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.632 |
| pfaA | rplC | CPS_3104 | CPS_0873 | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.805 |
| pfaA | rplM | CPS_3104 | CPS_4443 | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.871 |
| pfaA | rplO | CPS_3104 | CPS_0620 | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.785 |
| pfaA | rplQ | CPS_3104 | CPS_0627 | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | Ribosomal protein L17; Identified by similarity to SP:P02416; match to protein family HMM PF01196; match to protein family HMM TIGR00059. | 0.857 |
| pfaA | rplX | CPS_3104 | CPS_0612 | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | Ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.805 |
| rplB | CPS_4259 | CPS_0870 | CPS_4259 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Identified by match to protein family HMM PF00501. | 0.626 |
| rplB | pfaA | CPS_0870 | CPS_3104 | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | Polyunsaturated fatty acid synthase PfaA; Identified by similarity to GP:6691654; match to protein family HMM PF00109; match to protein family HMM PF00698; match to protein family HMM PF02801. | 0.632 |
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