STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4283Putative membrane protein; Identified by match to protein family HMM PF05940. (401 aa)    
Predicted Functional Partners:
hmpA
Flavohemoprotein; Identified by similarity to SP:P24232; match to protein family HMM PF00042; match to protein family HMM PF00175; match to protein family HMM PF00970; Belongs to the globin family.
  
  
 0.657
CPS_4282
Hypothetical protein; Identified by Glimmer2; putative.
       0.549
CPS_2132
Conserved hypothetical protein; Identified by match to protein family HMM PF01136.
 
    0.539
CPS_4731
Putative transcriptional regulator NosR; Identified by similarity to SP:Q00790; match to protein family HMM PF04205.
 
    0.501
CPS_4284
D-isomer specific 2-hydroxyacid dehydrogenase family protein; Identified by similarity to SP:Q59516; match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.480
norB
Nitric-oxide reductase, B subunit; Identified by similarity to SP:P98008; match to protein family HMM PF00115; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.449
nosZ
Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
 
  
 0.442
CPS_2131
Peptidase, U32 family; Identified by similarity to GP:26110166; match to protein family HMM PF01136.
 
    0.437
nosD
Copper ABC transporter, periplasmic copper-binding protein; Identified by similarity to SP:P19843; match to protein family HMM PF05048.
 
  
 0.427
CPS_1884
Putative regulatory protein NosR; Identified by similarity to SP:Q00790; match to protein family HMM PF04205.
 
    0.418
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.