STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4350Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037. (487 aa)    
Predicted Functional Partners:
ccoO
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
 
  
 0.949
ccoP
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.947
ccoN
Cytochrome c oxidase, cbb3-type, subunit I; Identified by match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.939
srkA
Conserved hypothetical protein; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
       0.790
CPS_1988
Putative membrane protein; Identified by similarity to GP:28806528.
 
   
 0.781
CPS_1989
Cytochrome oxidase maturation protein, cbb3-type; Identified by match to protein family HMM PF03597; match to protein family HMM TIGR00847.
 
  
 0.733
hemN
Oxygen-independent coproporphyrinogen III oxidase; Identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.732
CPS_1991
Conserved hypothetical protein; Identified by similarity to OMNI:SO2360.
 
  
 0.719
CPS_1990
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
  
 0.714
CPS_0008
Conserved hypothetical protein; Identified by similarity to OMNI:SO3280; match to protein family HMM PF04325.
  
    0.663
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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