STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4362Conserved hypothetical protein; Identified by similarity to OMNI:SO3842. (321 aa)    
Predicted Functional Partners:
CPS_2703
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.712
CPS_0574
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
    0.706
CPS_2872
Oxidoreductase, 2OG-Fe(II) oxygenase family; Identified by match to protein family HMM PF03171.
  
     0.683
CPS_1660
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01CG0485.
 
  
 0.671
CPS_4364
RNA polymerase sigma-70 factor, ECF subfamily; Identified by similarity to SP:Q06198; match to protein family HMM PF04542; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.657
CPS_0572
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    0.621
CPS_1467
Zinc carboxypeptidase-related protein; Identified by match to protein family HMM PF00246.
  
     0.617
CPS_4363
Conserved hypothetical protein; Identified by similarity to OMNI:SO3841.
       0.598
CPS_0608
Conserved hypothetical protein; Identified by similarity to OMNI:SO4402.
  
     0.566
CPS_3167
Putative peptidase; Identified by match to protein family HMM PF00326.
  
     0.561
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.