STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4378Conserved hypothetical protein; Identified by similarity to OMNI:SO4732; match to protein family HMM PF05960. (595 aa)    
Predicted Functional Partners:
CPS_2653
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.657
CPS_3757
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.647
orn
Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family.
       0.553
CPS_3091
Putative peptidase, M28 family; Identified by match to protein family HMM PF01546; match to protein family HMM PF04389.
  
     0.549
CPS_3760
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.508
CPS_0162
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
  
     0.507
CPS_2554
Peptidase, M28 family; Identified by similarity to GP:4877698; match to protein family HMM PF01546; match to protein family HMM PF04389.
  
     0.466
CPS_0333
Conserved hypothetical protein; Identified by similarity to OMNI:CC0476.
 
     0.461
CPS_0554
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSA0344.
  
    0.451
CPS_0734
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.446
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.