STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4382Putative transcriptional regulator; Identified by similarity to SP:P18415. (126 aa)    
Predicted Functional Partners:
CPS_4383
TonB domain/peptidase M56 domain protein; Identified by match to protein family HMM PF03544; match to protein family HMM PF05569; match to protein family HMM TIGR01352.
 
  
 0.971
CPS_1916
Copper-translocating P-type ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.838
CPS_2188
Putative peptidase, M28 family; Identified by match to protein family HMM PF04389.
  
     0.639
CPS_4415
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.
  
     0.527
CPS_0776
Putative permease; Identified by match to protein family HMM PF02687.
 
     0.520
pldB
Lysophospholipase L2; Identified by similarity to SP:P07000; match to protein family HMM PF00561.
       0.495
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
       0.478
CPS_4417
Putative ABC transporter, permease protein; Identified by similarity to PIR:AG0166; match to protein family HMM PF02687.
 
     0.474
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.469
CPS_3505
ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
     0.443
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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