CPS_4416 protein (Colwellia psychrerythraea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CPS_4416

ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (244 aa)

Predicted Functional Partners:

CPS_4417

0.950

CPS_1066

0.918

sapF

0.908

sapD

0.872

CPS_0776

0.836

CPS_4415

0.836

CPS_3505

0.826

CPS_2120

0.802

CPS_4700

0.789

CPS_0575

0.747

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPS_0575	CPS_0776	CPS_0575	CPS_0776	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative permease; Identified by match to protein family HMM PF02687.	0.743
CPS_0575	CPS_3505	CPS_0575	CPS_3505	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.626
CPS_0575	CPS_4415	CPS_0575	CPS_4415	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.804
CPS_0575	CPS_4416	CPS_0575	CPS_4416	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.747
CPS_0575	CPS_4700	CPS_0575	CPS_4700	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.504
CPS_0776	CPS_0575	CPS_0776	CPS_0575	Putative permease; Identified by match to protein family HMM PF02687.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.743
CPS_0776	CPS_4415	CPS_0776	CPS_4415	Putative permease; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.775
CPS_0776	CPS_4416	CPS_0776	CPS_4416	Putative permease; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.836
CPS_1066	CPS_4416	CPS_1066	CPS_4416	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.918
CPS_1066	sapD	CPS_1066	CPS_3778	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.	0.721
CPS_2120	CPS_4415	CPS_2120	CPS_4415	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.844
CPS_2120	CPS_4416	CPS_2120	CPS_4416	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.802
CPS_3505	CPS_0575	CPS_3505	CPS_0575	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.626
CPS_3505	CPS_4415	CPS_3505	CPS_4415	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	0.843
CPS_3505	CPS_4416	CPS_3505	CPS_4416	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.826
CPS_4415	CPS_0575	CPS_4415	CPS_0575	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.804
CPS_4415	CPS_0776	CPS_4415	CPS_0776	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Putative permease; Identified by match to protein family HMM PF02687.	0.775
CPS_4415	CPS_2120	CPS_4415	CPS_2120	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.844
CPS_4415	CPS_3505	CPS_4415	CPS_3505	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	ABC transporter, permease protein; Identified by match to protein family HMM PF02687.	0.843
CPS_4415	CPS_4416	CPS_4415	CPS_4416	Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730.	ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.836

page 1 of 3

Server load: low (28%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About