STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4421Hypothetical protein; Identified by Glimmer2; putative. (386 aa)    
Predicted Functional Partners:
CPS_4422
Alkaline phosphatase D domain protein; Identified by similarity to SP:P42251.
 
     0.853
CPS_4420
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715.
 
     0.761
CPS_2372
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.575
CPS_0413
Putative membrane protein; Identified by similarity to GP:29340934.
  
   
 0.568
CPS_2981
Putative alkaline phosphatase; Identified by similarity to GP:8886019; match to protein family HMM PF01663.
  
     0.406
CPS_0016
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.403
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.