STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilCType IV pilus biogenesis protein PilC; Identified by similarity to GP:151066; match to protein family HMM PF00482. (419 aa)    
Predicted Functional Partners:
pilB
Type IV pilus biogenesis protein PilB; Identified by similarity to GP:151065; match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538.
 
 0.960
pilD
Type 4 prepilin-like proteins leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.932
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 0.917
mshE
MSHA biogenesis protein MshE; Identified by similarity to OMNI:SO4109; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 0.916
pilM
Type IV pilus biogenesis protein PilM; Identified by similarity to OMNI:NTL03PA05045; match to protein family HMM TIGR01175.
 
 
 
 0.818
pilT
Twitching motility protein PilT; Identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420.
  
 0.812
pilU
Twitching motility protein PilU; Identified by match to protein family HMM PF00437; match to protein family HMM TIGR01420.
 
   
 0.802
CPS_0471
Type IV pilus biogenesis protein PilQ; Identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515.
 
 
 
 0.783
pilP
Type IV pilus biogenesis protein PilP; Identified by similarity to OMNI:NTL03PA05042; match to protein family HMM PF04351.
  
 
 
 0.727
CPS_2124
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
 
  
 0.691
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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