STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4509Putative toxin secretion protein; Identified by similarity to SP:P22519. (418 aa)    
Predicted Functional Partners:
CPS_4506
Toxin secretion ATP-binding protein; Identified by similarity to SP:P22520; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412.
 
 0.930
lapB
TPR domain protein; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
      
 0.708
CPS_2427
ABC transporter protein; Identified by match to protein family HMM PF00664.
 
 
 0.627
CPS_2428
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
 0.598
CPS_4325
ABC transporter, ATP-binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.
 
 
 0.583
tolC
Outer membrane protein TolC; Identified by similarity to GP:17384364; match to protein family HMM PF02321; match to protein family HMM TIGR01844.
  
 
 0.522
CPS_4326
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
 
 0.516
CPS_1839
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
 
 0.492
CPS_2386
Efflux transporter, RND family, outer membrane lipoprotein subunit; Identified by similarity to SP:P77211; match to protein family HMM PF02321.
  
 
 0.472
CPS_4646
RND efflux system, outer membrane lipoprotein, NodT family; Identified by similarity to SP:P77211; match to protein family HMM PF02321; match to protein family HMM TIGR01845.
  
 
 0.472
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.