STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4536ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (267 aa)    
Predicted Functional Partners:
CPS_4535
Putative membrane protein; Identified by match to protein family HMM PF02405; match to protein family HMM TIGR00056.
 0.999
CPS_4534
Mce family protein; Identified by match to protein family HMM PF02470.
 
 0.997
CPS_4533
Identified by match to protein family HMM PF05494.
 
 
 0.951
CPS_4532
STAS domain protein; Identified by match to protein family HMM PF01740.
  
 0.950
CPS_1411
Identified by match to protein family HMM PF05494.
 
 
 0.932
sapD
Peptide ABC transporter, ATP-binding protein; Identified by similarity to SP:P36636; match to protein family HMM PF00005; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
     
0.900
CPS_3414
Putative branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
      0.753
modB
Molybdenum ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
 
    0.711
CPS_1249
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
0.647
CPS_1004
ABC transporter, ATP-binding protein; Identified by similarity to SP:P36879; match to protein family HMM PF00005.
    
0.567
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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