STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4555Putative protease; This gene assignment is based partly on a multiple alignment of the best pairwise matches; identified by similarity to OMNI:SO4093; match to protein family HMM TIGR02099. (1323 aa)    
Predicted Functional Partners:
mreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.810
CPS_4554
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
      0.798
tldD
tldD protein; Identified by similarity to SP:P46473; match to protein family HMM PF01523.
 
   
 0.748
CPS_4810
Putative inner membrane protein AmpE; Identified by similarity to SP:P13017.
  
     0.716
smg
Smg protein; Identified by similarity to SP:P30853; match to protein family HMM PF04361; Belongs to the Smg family.
  
     0.692
CPS_3175
Conserved hypothetical protein; Identified by similarity to SP:Q9KT06.
  
     0.657
yihI
Conserved hypothetical protein; A GTPase-activating protein (GAP) that modifies Der/EngA GTPase function. May play a role in ribosome biogenesis. Belongs to the YihI family.
  
     0.653
CPS_2000
Conserved hypothetical protein; Identified by similarity to OMNI:VC2235.
  
     0.635
fliH
Flagellar assembly protein FliH; Identified by match to protein family HMM PF02108.
 
     0.629
zapD
Conserved hypothetical protein; Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.
  
     0.619
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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