STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mshBMSHA pilin protein MshB; Identified by similarity to OMNI:SO4106; match to protein family HMM PF07963; match to protein family HMM TIGR02532. (229 aa)    
Predicted Functional Partners:
CPS_4566
Putative MSHA biogenesis protein MshO; Identified by similarity to OMNI:VC0412; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
     0.875
mshL
MSHA biogenesis protein MshL; Identified by similarity to OMNI:VC0402; match to protein family HMM PF00263; match to protein family HMM TIGR02519.
 
  
 0.871
mshG
MSHA biogenesis protein MshG; Identified by similarity to OMNI:VC0406; match to protein family HMM PF00482.
 
  
 0.869
mshD
MSHA pilin protein MshD; Identified by similarity to OMNI:SO4103; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
   
 0.860
CPS_4578
Conserved hypothetical protein; Identified by similarity to GP:27360964.
 
  
 0.856
CPS_4574
Putative MSHA biogenesis protein MshN; Identified by similarity to OMNI:VC0404.
 
  
 0.840
mshE
MSHA biogenesis protein MshE; Identified by similarity to OMNI:SO4109; match to protein family HMM PF00437; match to protein family HMM PF05157.
 
 
 0.837
CPS_4563
Putative MSHA biogenesis protein MshP; Identified by similarity to OMNI:SO4101.
 
   
 0.821
gspJ
General secretion pathway protein J; Identified by similarity to SP:Q00517; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532.
  
 
 0.707
mshA
MSHA pilin protein MshA; Identified by similarity to OMNI:SO4105; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
    
0.694
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.