STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4578Conserved hypothetical protein; Identified by similarity to GP:27360964. (230 aa)    
Predicted Functional Partners:
mshL
MSHA biogenesis protein MshL; Identified by similarity to OMNI:VC0402; match to protein family HMM PF00263; match to protein family HMM TIGR02519.
 
  
 0.958
CPS_4574
Putative MSHA biogenesis protein MshN; Identified by similarity to OMNI:VC0404.
 
     0.910
mshB
MSHA pilin protein MshB; Identified by similarity to OMNI:SO4106; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.856
mshM
MSHA biogenesis protein MshM; Identified by similarity to OMNI:VC0403.
 
    0.855
mshA
MSHA pilin protein MshA; Identified by similarity to OMNI:SO4105; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.853
CPS_4566
Putative MSHA biogenesis protein MshO; Identified by similarity to OMNI:VC0412; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
  
 0.848
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 0.843
mshD
MSHA pilin protein MshD; Identified by similarity to OMNI:SO4103; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
 
     0.824
CPS_4563
Putative MSHA biogenesis protein MshP; Identified by similarity to OMNI:SO4101.
 
     0.816
CPS_4577
Hypothetical protein; Identified by Glimmer2; putative.
       0.798
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.