STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspKGeneral secretion pathway protein K; Identified by similarity to GP:4139244; match to protein family HMM PF03934. (371 aa)    
Predicted Functional Partners:
gspJ
General secretion pathway protein J; Identified by similarity to SP:Q00517; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532.
 
 
 0.997
gspI
General secretion pathway protein I; Identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532.
 
 
 0.996
gspH
General secretion pathway protein H; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532.
 
 
 0.985
gspG
General secretion pathway protein G; Identified by similarity to GP:4139240; match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
 
 
 0.970
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.961
gspM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.951
gspD
General secretion pathway protein D; Identified by similarity to SP:P31780; similarity to GP:4139236; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517.
 
   
 0.898
gspC
General secretion pathway protein C; Identified by similarity to GP:609624; match to protein family HMM TIGR01713.
 
  
 0.882
gspN
General secretion pathway protein N; Identified by match to protein family HMM PF01203.
 
   
 0.865
gspF
General secretion pathway protein F; Identified by similarity to GP:4139238; match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
   
 0.813
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.