STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspDGeneral secretion pathway protein D; Identified by similarity to SP:P31780; similarity to GP:4139236; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM TIGR02517. (697 aa)    
Predicted Functional Partners:
gspC
General secretion pathway protein C; Identified by similarity to GP:609624; match to protein family HMM TIGR01713.
 
 
 0.991
gspG
General secretion pathway protein G; Identified by similarity to GP:4139240; match to protein family HMM PF07963; match to protein family HMM TIGR01710; match to protein family HMM TIGR02532.
  
 0.976
gspJ
General secretion pathway protein J; Identified by similarity to SP:Q00517; match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01711; match to protein family HMM TIGR02532.
 
  
 0.960
gspE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.953
gspI
General secretion pathway protein I; Identified by match to protein family HMM PF02501; match to protein family HMM PF07963; match to protein family HMM TIGR01707; match to protein family HMM TIGR02532.
 
  
 0.948
gspK
General secretion pathway protein K; Identified by similarity to GP:4139244; match to protein family HMM PF03934.
 
   
 0.942
gspF
General secretion pathway protein F; Identified by similarity to GP:4139238; match to protein family HMM PF00482; match to protein family HMM TIGR02120.
 
  
 0.935
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.919
gspM
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.904
gspH
General secretion pathway protein H; Identified by match to protein family HMM PF07963; match to protein family HMM TIGR01708; match to protein family HMM TIGR02532.
 
  
 0.872
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.