STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4607Putative membrane protein; Identified by match to protein family HMM PF07885. (249 aa)    
Predicted Functional Partners:
CPS_4608
Putative membrane protein; Identified by similarity to GP:28809985; match to protein family HMM PF01594.
 
     0.842
CPS_4605
Identified by match to protein family HMM PF00903.
       0.607
CPS_2984
Sulfatase family protein; Identified by similarity to SP:P25549; match to protein family HMM PF00884.
  
     0.599
CPS_2983
Putative arylsulfatase; Identified by similarity to EGAD:56693; match to protein family HMM PF00884.
  
     0.595
CPS_3032
Sulfatase family protein; Identified by similarity to SP:P25549; match to protein family HMM PF00884.
  
     0.594
CPS_2985
Sulfatase family protein; Identified by similarity to SP:P25549; match to protein family HMM PF00884.
  
     0.592
CPS_0660
Sulfatase family protein; Identified by similarity to SP:P25549; match to protein family HMM PF00884.
  
     0.591
CPS_4606
Putative lipoprotein.
       0.590
CPS_4604
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
   0.561
CPS_3377
Putative lipoprotein; Identified by match to protein family HMM PF06742; match to protein family HMM PF06863.
  
     0.508
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.