STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4608Putative membrane protein; Identified by similarity to GP:28809985; match to protein family HMM PF01594. (370 aa)    
Predicted Functional Partners:
CPS_4607
Putative membrane protein; Identified by match to protein family HMM PF07885.
 
     0.842
CPS_4605
Identified by match to protein family HMM PF00903.
 
     0.642
CPS_0419
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.623
CPS_4163
Secretion protein, HlyD family; Identified by similarity to SP:P27303; similarity to SP:P32716; match to protein family HMM PF00529.
 
    0.593
CPS_2993
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.569
CPS_4167
Sodium:dicarboxylate symporter family/bacterial extracellular solute-binding family 3 protein; Identified by match to protein family HMM PF00375; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
    0.569
CPS_3226
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.544
CPS_4606
Putative lipoprotein.
       0.470
CPS_4604
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
 
     0.469
CPS_0105
Conserved hypothetical protein; Identified by similarity to GP:27359325.
  
     0.462
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.