STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nagZ2Beta-hexosaminidase; Identified by similarity to GP:3426176; match to protein family HMM PF00933. (637 aa)    
Predicted Functional Partners:
CPS_2880
Putative lipoprotein.
  
 0.938
CPS_1025
Beta-hexosaminidase; Identified by similarity to SP:Q04786; match to protein family HMM PF00728; match to protein family HMM PF02838; match to protein family HMM PF03173; match to protein family HMM PF03174.
    
 0.907
nagZ1
Beta-hexosaminidase; Identified by similarity to SP:P49008; match to protein family HMM PF00728; match to protein family HMM PF02838.
    
 0.907
anmK
Conserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
 
  
 0.788
murQ
Glucokinase regulator-related protein; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate. Together with AnmK, is also required for the utilization of anhydro-N-acetylmuramic acid (anhMurNAc) either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling.
 
  
 0.744
ampD
N-acetyl-anhydromuramyl-L-alanine amidase; Identified by similarity to GP:14625828; match to protein family HMM PF01510.
    
 0.646
amiB
N-acetylmuramoyl-L-alanine amidase; Identified by similarity to SP:P26365; match to protein family HMM PF01476; match to protein family HMM PF01520.
    
 0.592
elbB
Enhancing lycopene biosynthesis protein 2; Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate; Belongs to the peptidase C56 family.
       0.524
CPS_4611
Multidrug resistance transporter, Bcr/CflA family; Identified by match to protein family HMM PF07690; match to protein family HMM TIGR00710.
     
 0.496
CPS_4612
Aminotransferase/transcriptional regulator, GntR family; Identified by match to protein family HMM PF00155; match to protein family HMM PF00392.
       0.491
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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