STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4623Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches. (201 aa)    
Predicted Functional Partners:
CPS_3195
Conserved hypothetical protein; This gene assignment is based partly on a multiple alignment of the best pairwise matches.
  
     0.701
CPS_4455
M23/M37 peptidase domain protein; Identified by match to protein family HMM PF01551.
  
     0.677
CPS_4624
Voltage-gated chloride channel; Identified by match to protein family HMM PF00654.
       0.582
CPS_4625
Putative membrane protein; Identified by match to protein family HMM PF03653.
       0.582
erpA
HesB/YadR/YfhF family protein; Required for insertion of 4Fe-4S clusters for at least IspG.
  
    0.534
CPS_0078
Conserved hypothetical protein; Identified by similarity to OMNI:SO4307; match to protein family HMM PF04340.
  
     0.517
CPS_2614
Conserved hypothetical protein; Identified by similarity to OMNI:SO2179.
  
     0.512
CPS_4578
Conserved hypothetical protein; Identified by similarity to GP:27360964.
  
     0.511
CPS_3666
Conserved hypothetical protein; Identified by similarity to OMNI:SO3357.
  
     0.504
CPS_4566
Putative MSHA biogenesis protein MshO; Identified by similarity to OMNI:VC0412; match to protein family HMM PF07963; match to protein family HMM TIGR02532.
  
     0.491
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.