gabT protein (Colwellia psychrerythraea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

gabT

4-aminobutyrate aminotransferase; Identified by similarity to SP:P22256; match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (428 aa)

Predicted Functional Partners:

gabD2

0.963

CPS_1007

0.949

mmsA1

0.924

CPS_0387

0.924

mmsA2

0.924

gabD1

0.924

CPS_2025

0.924

mmsA3

0.924

mmsA4

0.924

CPS_4669

0.924

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPS_0387	CPS_1007	CPS_0387	CPS_1007	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	Putative decarboxylase; Identified by match to protein family HMM PF00282.	0.911
CPS_0387	CPS_2025	CPS_0387	CPS_2025	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.801
CPS_0387	CPS_4669	CPS_0387	CPS_4669	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.908
CPS_0387	gabT	CPS_0387	CPS_4664	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	4-aminobutyrate aminotransferase; Identified by similarity to SP:P22256; match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.924
CPS_0387	mmsA1	CPS_0387	CPS_0098	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.906
CPS_0387	mmsA2	CPS_0387	CPS_1432	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.906
CPS_0387	mmsA3	CPS_0387	CPS_3423	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.915
CPS_0387	mmsA4	CPS_0387	CPS_4060	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	Methylmalonate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01722.	0.906
CPS_1007	CPS_0387	CPS_1007	CPS_0387	Putative decarboxylase; Identified by match to protein family HMM PF00282.	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	0.911
CPS_1007	CPS_4669	CPS_1007	CPS_4669	Putative decarboxylase; Identified by match to protein family HMM PF00282.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.911
CPS_1007	gabT	CPS_1007	CPS_4664	Putative decarboxylase; Identified by match to protein family HMM PF00282.	4-aminobutyrate aminotransferase; Identified by similarity to SP:P22256; match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.949
CPS_2025	CPS_0387	CPS_2025	CPS_0387	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	0.801
CPS_2025	CPS_4669	CPS_2025	CPS_4669	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	0.801
CPS_2025	gabD1	CPS_2025	CPS_2023	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family.	0.900
CPS_2025	gabD2	CPS_2025	CPS_4665	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	Succinate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01780; Belongs to the aldehyde dehydrogenase family.	0.900
CPS_2025	gabT	CPS_2025	CPS_4664	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	4-aminobutyrate aminotransferase; Identified by similarity to SP:P22256; match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.924
CPS_4669	CPS_0387	CPS_4669	CPS_0387	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Identified by similarity to GP:16209569; match to protein family HMM PF00171.	0.908
CPS_4669	CPS_1007	CPS_4669	CPS_1007	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Putative decarboxylase; Identified by match to protein family HMM PF00282.	0.911
CPS_4669	CPS_2025	CPS_4669	CPS_2025	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	Aminotransferase, class III; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.801
CPS_4669	gabT	CPS_4669	CPS_4664	Identified by match to protein family HMM PF00171; Belongs to the aldehyde dehydrogenase family.	4-aminobutyrate aminotransferase; Identified by similarity to SP:P22256; match to protein family HMM PF00202; match to protein family HMM TIGR00700; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.924

page 1 of 4

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About