CPS_4685 protein (Colwellia psychrerythraea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CPS_4685

Hypothetical protein; Identified by Glimmer2; putative. (134 aa)

Predicted Functional Partners:

CPS_4686

0.447

CPS_4687

0.404

CPS_4688

0.404

CPS_4689

0.404

Your Current Organism:

Colwellia psychrerythraea

NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CPS_4685	CPS_4686	Hypothetical protein; Identified by Glimmer2; putative.	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.447
CPS_4685	CPS_4687	Hypothetical protein; Identified by Glimmer2; putative.	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	0.404
CPS_4685	CPS_4688	Hypothetical protein; Identified by Glimmer2; putative.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	0.404
CPS_4685	CPS_4689	Hypothetical protein; Identified by Glimmer2; putative.	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	0.404
CPS_4686	CPS_4685	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	Hypothetical protein; Identified by Glimmer2; putative.	0.447
CPS_4686	CPS_4687	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	0.941
CPS_4686	CPS_4688	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	0.955
CPS_4686	CPS_4689	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	0.845
CPS_4687	CPS_4685	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	Hypothetical protein; Identified by Glimmer2; putative.	0.404
CPS_4687	CPS_4686	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.941
CPS_4687	CPS_4688	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	0.996
CPS_4687	CPS_4689	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	0.984
CPS_4688	CPS_4685	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	Hypothetical protein; Identified by Glimmer2; putative.	0.404
CPS_4688	CPS_4686	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.955
CPS_4688	CPS_4687	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	0.996
CPS_4688	CPS_4689	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	0.999
CPS_4689	CPS_4685	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	Hypothetical protein; Identified by Glimmer2; putative.	0.404
CPS_4689	CPS_4686	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	Oxidoreductase, FAD-binding/iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF01565; match to protein family HMM PF02913.	0.845
CPS_4689	CPS_4687	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	Conserved hypothetical protein; Identified by similarity to GP:27358777; match to protein family HMM PF02589.	0.984
CPS_4689	CPS_4688	Cysteine-rich domain protein; Identified by similarity to GP:27358775; match to protein family HMM PF02754.	Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037; match to protein family HMM TIGR00273.	0.999

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Cooccurrence

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About