STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampDN-acetyl-anhydromuramyl-L-alanine amidase; Identified by similarity to GP:14625828; match to protein family HMM PF01510. (189 aa)    
Predicted Functional Partners:
CPS_4810
Putative inner membrane protein AmpE; Identified by similarity to SP:P13017.
  
  
 0.838
nadC
Nicotinate-nucleotide pyrophosphorylase; Identified by match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; Belongs to the NadC/ModD family.
  
  
 0.647
nagZ2
Beta-hexosaminidase; Identified by similarity to GP:3426176; match to protein family HMM PF00933.
    
 0.646
CPS_4812
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA04966; match to protein family HMM TIGR02281.
       0.573
CPS_4195
LysM domain /ErfK/YbiS/YcfS/YnhG domain protein; Identified by match to protein family HMM PF01476; match to protein family HMM PF03734.
     
 0.545
CPS_1025
Beta-hexosaminidase; Identified by similarity to SP:Q04786; match to protein family HMM PF00728; match to protein family HMM PF02838; match to protein family HMM PF03173; match to protein family HMM PF03174.
     
  0.499
nagZ1
Beta-hexosaminidase; Identified by similarity to SP:P49008; match to protein family HMM PF00728; match to protein family HMM PF02838.
     
  0.499
pdhR
Pyruvate dehydrogenase complex repressor; Identified by similarity to SP:P06957; match to protein family HMM PF00392; match to protein family HMM PF07729.
     
 0.490
CPS_2000
Conserved hypothetical protein; Identified by similarity to OMNI:VC2235.
 
   
 0.489
anmK
Conserved hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
   
 0.481
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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