STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_4962Conserved hypothetical protein; Identified by similarity to OMNI:SO1411. (352 aa)    
Predicted Functional Partners:
CPS_0068
Sensory box sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL03PA03271; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
 
 0.527
CPS_2703
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.523
CPS_3419
Sensory box sensor histidine kinase/response regulator; Identified by similarity to OMNI:SO2742; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
   0.522
CPS_4961
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015.
 
     0.503
CPS_3751
TPR domain protein; Identified by match to protein family HMM PF00515.
  
     0.478
CPS_0939
Sensory box sensor histidine kinase/response regulator; Identified by similarity to OMNI:NTL03PA03271; match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518.
 
    0.475
CPS_1192
Conserved hypothetical protein; Identified by similarity to OMNI:SO2934.
  
     0.452
CPS_3994
Putative lipoprotein.
  
     0.443
CPS_0554
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSA0344.
  
     0.419
CPS_4963
Hypothetical protein; Identified by Glimmer2; putative.
       0.419
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.