Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CPS_5003Hypothetical protein; Identified by Glimmer2; putative. (375 aa)    
Predicted Functional Partners:
CPS_5004
Identified by match to protein family HMM PF04932.
 
   
 0.892
CPS_5002
Identified by match to protein family HMM PF01757.
 
     0.849
CPS_4997
Identified by match to protein family HMM PF03372.
 
     0.805
CPS_4996
Identified by match to protein family HMM PF03372.
 
     0.750
CPS_5001
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   
 0.735
CPS_4999
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   
 0.710
CPS_5000
Identified by match to protein family HMM PF00733.
       0.700
CPS_5022
Identified by match to protein family HMM PF01522.
 
   
 0.699
CPS_5020
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
 
   
 0.666
CPS_5016
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   
 0.618
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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