STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_5020Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535. (390 aa)    
Predicted Functional Partners:
CPS_5022
Identified by match to protein family HMM PF01522.
 
  
 0.961
CPS_5023
Bacterial sugar transferase domain protein; Identified by match to protein family HMM PF02397.
   
 0.938
CPS_5017
Identified by match to protein family HMM PF01522.
 
  
 0.898
CPS_5018
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534.
 
   
 0.874
CPS_0310
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.856
CPS_5004
Identified by match to protein family HMM PF04932.
 
  
 0.811
CPS_5021
Hypothetical protein; Identified by Glimmer2; putative.
       0.798
CPS_5019
Acetyltransferase, CysE/LacA/LpxA/NodL family.
     
 0.797
CPS_3163
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
 
 0.731
CPS_3751
TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
 0.731
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.