STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_5025Polysaccharide biosynthesis/export protein; Identified by similarity to SP:P76388; match to protein family HMM PF02563. (211 aa)    
Predicted Functional Partners:
CPS_5026
Chain length determinant family protein; Identified by match to protein family HMM PF02706.
 
 
 0.951
CPS_0580
Tyrosine-protein kinase; Identified by similarity to SP:P38134; match to protein family HMM PF02706.
 
 
 0.932
CPS_0578
Polysaccharide biosynthesis/export protein; Identified by similarity to SP:Q46629; match to protein family HMM PF02563.
  
  
 
0.918
CPS_3645
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
  
  
  0.914
CPS_5027
Putative exopolysaccharide biosynthesis protein; Identified by similarity to SP:P39851.
 
 
 0.912
CPS_5023
Bacterial sugar transferase domain protein; Identified by match to protein family HMM PF02397.
 
  
 0.910
CPS_3249
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
     
  0.900
CPS_5029
Putative general secretion pathway protein A; Identified by similarity to SP:P45754.
 
     0.858
CPS_0310
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
 
 
 0.828
CPS_0309
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
 
  
 0.823
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.