STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CPS_5042ABC transporter, permease protein, putative; Identified by match to protein family HMM PF02687. (415 aa)    
Predicted Functional Partners:
CPS_5043
Conserved hypothetical protein; Identified by similarity to GP:28808723.
 
 
 
 0.933
CPS_5040
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.932
CPS_5039
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.900
CPS_5041
Putative ABC transporter, permease protein; Identified by match to protein family HMM PF02687.
 
    
0.829
lolD
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.692
lolA
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.648
CPS_2527
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.646
CPS_0775
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.635
CPS_2119
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.623
CPS_2640
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.618
Your Current Organism:
Colwellia psychrerythraea
NCBI taxonomy Id: 167879
Other names: C. psychrerythraea 34H, Colwellia psychrerythraea 34H, Colwellia psychrerythraea str. 34H, Colwellia psychrerythraea strain 34H, Colwellia sp. 34H
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.