STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_1113Signal transduction histidine kinase. (506 aa)    
Predicted Functional Partners:
ATC1_1112
Two component transcriptional regulator, LuxR family.
 0.963
GAP41086.1
Protein containing PAS domain S-box.
 
 0.959
ATC1_13163
Protein containing PAS domain S-box.
 
 0.958
GAP41584.1
Two component transcriptional regulator, LuxR family.
 0.929
ATC1_13980
Protein containing PAS domain S-box.
   
 0.915
GAP41603.1
Protein containing PAS domain S-box.
 
 0.871
ATC1_13943
Protein containing PAS domain S-box.
  
 0.760
ATC1_1114
ABC-type antimicrobial peptide transport system, permease component.
  
   0.734
ATC1_13745
Histidine kinase.
    
 0.730
ATC1_1115
ABC-type lipoprotein export system, ATPase component.
  
    0.724
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.