STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_11345Cellobiose phosphorylase. (814 aa)    
Predicted Functional Partners:
ATC1_13211
Periplasmic beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.873
ATC1_11253
Maltodextrin phosphorylase.
     
 0.793
GAP41104.1
Broad-specificity cellobiase.
    
 0.708
GAP41782.1
Beta-glucosidase/6-phospho-beta-glucosidase/ beta-galactosidase; Belongs to the glycosyl hydrolase 1 family.
    
 0.708
ATC1_126
Glucose-1-phosphate cytidylyltransferase.
    
  0.627
ATC1_13410
Glycosidase.
   
 
 0.591
ATC1_11344
Hypothetical protein.
       0.563
ATC1_1267
Protein containing PAN domain/Ricin-type beta-trefoil lectin domain.
    
 0.563
ATC1_12294
Hypothetical protein.
     
 0.516
GAP41105.1
Glycosyl hydrolase family 10.
     
 0.504
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.