STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_12100Hypothetical protein. (343 aa)    
Predicted Functional Partners:
ATC1_13492
Hypothetical protein.
  
   
 0.646
ATC1_11120
Protein containing bacterial SH3 domain.
  
     0.624
ATC1_13418
Protein containing NUDIX domain.
  
     0.617
ATC1_12255
Major Facilitator Superfamily.
  
     0.605
ATC1_1344
Hypothetical protein.
  
     0.600
ATC1_12254
Fucose permease.
  
     0.598
ATC1_13694
Tfp pilus assembly protein PilF.
  
    0.588
GAP41182.1
Protein containing LysM domain.
  
   
 0.586
GAP41328.1
Hypothetical protein.
  
     0.571
ATC1_1325
Hypothetical protein.
  
     0.544
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.