STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_12203Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (422 aa)    
Predicted Functional Partners:
GAP41590.1
uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.767
GAP41234.1
uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.753
GAP41225.1
uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.708
GAP41249.1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
    0.686
ATC1_12427
uroporphyrinogen-III decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
  
     0.669
GAP41224.1
Methanogenic corrinoid protein MtbC1.
 
 
 0.570
ATC1_13730
Predicted metal-binding protein.
  
     0.522
ATC1_11172
Protoporphyrinogen oxidase.
  
 
 0.486
ATC1_12355
Protoporphyrinogen oxidase.
  
 
 0.486
ATC1_1287
Hypothetical protein.
  
     0.427
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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