STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_12207ABC-type sugar transport system, ATPase component. (535 aa)    
Predicted Functional Partners:
ATC1_12206
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
   0.862
ATC1_12205
Uroporphyrinogen decarboxylase.
       0.658
ATC1_13633
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
  0.567
ATC1_12208
ABC-type sugar transport system, periplasmic component, contains N-terminal xre family HTH domain.
  
   0.553
GAP41421.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
  0.538
ATC1_12431
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
  0.529
ATC1_12251
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
  0.517
ATC1_11115
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
  0.515
ATC1_12432
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
  0.513
ATC1_1258
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component.
 
  0.509
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.