STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_12249Hypothetical protein. (422 aa)    
Predicted Functional Partners:
ATC1_12248
Hypothetical protein.
     0.970
ATC1_13223
Acetyl esterase/lipase.
 
  0.953
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
  
  
  0.582
GAP41179.1
Acetyl esterase/lipase.
 
 
  0.515
GAP41813.1
Mg-chelatase subunit ChlD.
    
 0.504
ATC1_1147
Acyl carrier protein.
  
 
 0.494
ATC1_12447
Phosphopantetheine attachment site.
  
 
 0.494
ATC1_12469
Acyl carrier protein.
  
 
 0.494
GAP41616.1
Glycine cleavage system T protein.
    
  0.482
GAP41654.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
 
  0.475
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.