STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_12256Ubiquinone/menaquinone biosynthesis C-methylase UbiE. (477 aa)    
Predicted Functional Partners:
ATC1_12257
Predicted permease.
 
     0.778
GAP41616.1
Glycine cleavage system T protein.
    
 0.768
ATC1_11277
NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein.
    
 0.657
ATC1_12254
Fucose permease.
 
     0.562
ATC1_12255
Major Facilitator Superfamily.
 
     0.526
GAP41693.1
Acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.458
ATC1_12258
Small redox-active disulfide protein 2.
       0.441
ATC1_117
Glycosyltransferase, GT2 family.
  
 0.437
ATC1_1214
Glycosyltransferase, GT2 family.
  
 0.437
ATC1_13311
Putative selenate reductase, YgfK subunit.
  
 
 0.415
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.